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1

Routes for COVID-19 importation in Brazil

Candido, Darlan Da S, Watts, Alexander, Abade, Leandro, Kraemer, Moritz U G, Pybus, Oliver G, Croda, Julio, Oliveira, Wanderson, Khan, Kamran, Sabino, Ester C, Faria, Nuno R

Journal:

Journal of Travel Medicine

Année:

2020

Langue:

english

Fichier:

PDF, 645 KB

english, 2020

2

Tracking virus outbreaks in the twenty-first century

Grubaugh, Nathan D., Ladner, Jason T., Lemey, Philippe, Pybus, Oliver G., Rambaut, Andrew, Holmes, Edward C., Andersen, Kristian G.

Journal:

Nature Microbiology

Année:

2019

Langue:

english

Fichier:

PDF, 1.74 MB

english, 2019

3

Oropouche virus cases identified in Ecuador using an optimised qRT-PCR informed by metagenomic sequencing

Wise, Emma L., MÃ¡rquez, Sully, Mellors, Jack, Paz, VerÃ³nica, Atkinson, Barry, Gutierrez, Bernardo, Zapata, Sonia, Coloma, Josefina, Pybus, Oliver G., Jackson, Simon K., Trueba, Gabriel, Fejer, Gyorg

Journal:

PLoS Neglected Tropical Diseases

Année:

2020

Langue:

english

Fichier:

PDF, 1.40 MB

english, 2020

4

Correlating viral phenotypes with phylogeny: Accounting for phylogenetic uncertainty

Joe Parker, Andrew Rambaut, Oliver G. Pybus

Journal:

Infection, Genetics and Evolution

Année:

2008

Langue:

english

Fichier:

PDF, 469 KB

english, 2008

5

Molecular epidemiology reveals the role of war in the spread of HIV in Ukraine

Vasylyeva, Tetyana I., Liulchuk, Mariia, Friedman, Samuel R., Sazonova, Iana, Faria, Nuno R., Katzourakis, Aris, Babii, Nataliia, Scherbinska, Alla, Thézé, Julien, Pybus, Oliver G., Smyrnov, Pavlo, Mb

Journal:

Proceedings of the National Academy of Sciences

Année:

2018

Langue:

english

Fichier:

PDF, 5.74 MB

english, 2018

6

Comparative population dynamics of mosquito-borne flaviviruses

S.Susanna Twiddy, Oliver G. Pybus, Edward C. Holmes

Journal:

Infection, Genetics and Evolution

Année:

2003

Langue:

english

Fichier:

PDF, 115 KB

english, 2003

7

The genomic and epidemiological dynamics of human influenza A virus

Rambaut, Andrew, Pybus, Oliver G., Nelson, Martha I., Viboud, Cecile, Taubenberger, Jeffery K., Holmes, Edward C.

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 772 KB

english, 2008

8

Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic

Smith, Gavin J. D., Vijaykrishna, Dhanasekaran, Bahl, Justin, Lycett, Samantha J., Worobey, Michael, Pybus, Oliver G., Ma, Siu Kit, Cheung, Chung Lam, Raghwani, Jayna, Bhatt, Samir

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 1.31 MB

english, 2009

9

Evolutionary analysis of the dynamics of viral infectious disease

Pybus, Oliver G., Rambaut, Andrew

Journal:

Nature Reviews Genetics

Année:

2009

Langue:

english

Fichier:

PDF, 552 KB

english, 2009

10

PHYLOGENY, NICHES, AND RELATIVE ABUNDANCE IN NATURAL COMMUNITIES

Kelly, Colleen K., Bowler, Michael G., Pybus, Oliver, Harvey, Paul H.

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 298 KB

english, 2008

11

Defining HIV-1 transmission clusters based on sequence data

Hassan, Amin S., Pybus, Oliver G., Sanders, Eduard J., Albert, Jan, Esbjörnsson, Joakim

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.09 MB

english, 2017

12

Genomic Insights into Zika Virus Emergence and Spread

Grubaugh, Nathan D., Faria, Nuno R., Andersen, Kristian G., Pybus, Oliver G.

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 473 KB

english, 2018

13

Dating Phylogenies with Hybrid Local Molecular Clocks

Aris-Brosou, Stéphane, Pybus, Oliver

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 174 KB

english, 2007

14

Where do all the subtypes go? Temporal dynamics of H8–H12 influenza A viruses in waterfowl

Wille, Michelle, Latorre-Margalef, Neus, Tolf, Conny, Halpin, Rebecca, Wentworth, David, Fouchier, Ron A M, Raghwani, Jayna, Pybus, Oliver G, Olsen, Björn, Waldenström, Jonas

Journal:

Virus Evolution

Année:

2018

Langue:

english

Fichier:

PDF, 1.77 MB

english, 2018

15

A60 Revealing the evolution of virulence in RNA viruses

Escalera-Zamudio, Marina, Gutiérrez, Bernardo, Thézé, Julien, Pybus, Oliver G

Journal:

Virus Evolution

Année:

2019

Langue:

english

Fichier:

PDF, 65 KB

english, 2019

16

Assessing the role of live poultry trade in community-structured transmission of avian influenza in China

Yang, Qiqi, Zhao, Xiang, Lemey, Philippe, Suchard, Marc A., Bi, Yuhai, Shi, Weifeng, Liu, Di, Qi, Wenbao, Zhang, Guogang, Stenseth, Nils Chr., Pybus, Oliver G., Tian, Huaiyu

Journal:

Proceedings of the National Academy of Sciences

Année:

2020

Langue:

english

Fichier:

PDF, 1.23 MB

english, 2020

17

Dominant influence of an HLA-B27 restricted CD8+ T cell response in mediating HCV clearance and evolution

Christoph Neumann-Haefelin, Susan McKiernan, Scott Ward, Sergei Viazov, Hans Christian Spangenberg, Thomas Killinger, Thomas F. Baumert, Natalja Nazarova, Isabelle Sheridan, Oliver Pybus, Fritz von We

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 1.42 MB

english, 2006

18

Complete genome sequencing and phylogenetic analysis of HCV isolates from China reveals a new subtype, designated 6u

Xueshan Xia, Wenhua Zhao, Kok Keng Tee, Yue Feng, Yutaka Takebe, Qihan Li, Oliver G. Pybus, Ling Lu

Journal:

Journal of Medical Virology

Année:

2008

Langue:

english

Fichier:

PDF, 616 KB

english, 2008

19

A Bayesian statistical analysis of human T-cell lymphotropic virus evolutionary rates

Philippe Lemey, Oliver G. Pybus, Sonia Van Dooren, Anne-Mieke Vandamme

Journal:

Infection, Genetics and Evolution

Année:

2005

Langue:

english

Fichier:

PDF, 332 KB

english, 2005

20

Comparative population dynamics of HIV-1 subtypes B and C: subtype-specific differences in patterns of epidemic growth

Polly R. Walker, Oliver G. Pybus, Andrew Rambaut, Edward C. Holmes

Journal:

Infection, Genetics and Evolution

Année:

2005

Langue:

english

Fichier:

PDF, 260 KB

english, 2005

21

The hepatitis C virus epidemic among injecting drug users

Oliver G. Pybus, Alexandra Cochrane, Edward C. Holmes, Peter Simmonds

Journal:

Infection, Genetics and Evolution

Année:

2005

Langue:

english

Fichier:

PDF, 228 KB

english, 2005

22

Evolution and dispersal of St. Louis encephalitis virus in the Americas

Albert J. Auguste, Oliver G. Pybus, Christine V.F. Carrington

Journal:

Infection, Genetics and Evolution

Année:

2009

Langue:

english

Fichier:

PDF, 310 KB

english, 2009

23

Detecting natural selection in RNA virus populations using sequence summary statistics

Samir Bhatt, Aris Katzourakis, Oliver G. Pybus

Journal:

Infection, Genetics and Evolution

Année:

2010

Langue:

english

Fichier:

PDF, 515 KB

english, 2010

24

Variable epidemic histories of hepatitis C virus genotype 2 infection in West Africa and Cameroon

Régis Pouillot, Guillaume Lachenal, Oliver G. Pybus, Dominique Rousset, Richard Njouom

Journal:

Infection, Genetics and Evolution

Année:

2008

Langue:

english

Fichier:

PDF, 777 KB

english, 2008

25

PRAXIS MAKES PERFECT?

Journal:

Diversity and Distributions

Année:

2000

Langue:

english

Fichier:

PDF, 154 KB

english, 2000

26

The mode and tempo of hepatitis C virus evolution within and among hosts

Rebecca R Gray, Joe Parker, Philippe Lemey, Marco Salemi, Aris Katzourakis, Oliver G Pybus

Journal:

BMC Evolutionary Biology

Année:

2011

Langue:

english

Fichier:

PDF, 356 KB

english, 2011

27

Rates of Molecular Evolution in RNA Viruses: A Quantitative Phylogenetic Analysis

Gareth M. Jenkins, Andrew Rambaut, Oliver G. Pybus, Edward C. Holmes

Journal:

Journal of Molecular Evolution

Année:

2002

Langue:

english

Fichier:

PDF, 825 KB

english, 2002

28

Different Epidemic Potentials of the HIV-1B and C Subtypes

Marco Salemi, Tulio de Oliveira, Marcelo A. Soares, Oliver Pybus, Ana T. Dumans, Anne-Mieke Vandamme, Amilcar Tanuri, Sharon Cassol, Walter M. Fitch

Journal:

Journal of Molecular Evolution

Année:

2005

Langue:

english

Fichier:

PDF, 254 KB

english, 2005

29

Mitogenetic structure of brown bears (Ursus arctos L.) in northeastern Europe and a new time frame for the formation of European brown bear lineages

URMAS SAARMA, SIMON Y. W. HO, OLIVER G. PYBUS, MARJU KALJUSTE, IGOR L. TUMANOV, ILPO. KOJOLA, ALEX A. VOROBIEV, NIKOLAI I. MARKOV, ALEXANDER P. SAVELJEV, HARRI VALDMANN, ELENA A. LYAPUNOVA, ALEXEI V.

Journal:

Molecular Ecology

Année:

2007

Langue:

english

Fichier:

PDF, 296 KB

english, 2007

30

The seroprevalence of hepatitis C virus (HCV) among 559,890 first-time volunteer blood donors in China reflects regional heterogeneity in HCV prevalence and changes in blood donor recruitment models

Yongshui Fu, Wenjie Xia, Yizhong Wang, Linwei Tian, Oliver G. Pybus, Ling Lu, Kenrad Nelson

Journal:

Transfusion (Wiley)

Année:

2010

Langue:

english

Fichier:

PDF, 193 KB

english, 2010

31

ANCIENT URBANIZATION PREDICTS GENETIC RESISTANCE TO TUBERCULOSIS

Ian Barnes, Anna Duda, Oliver G. Pybus, Mark G. Thomas

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 203 KB

english, 2011

32

10.1038/35074179

Rambaut, Andrew, Robertson, David L., Pybus, Oliver G., Peeters, Martine, Holmes, Edward C.

Journal:

Année:

2001

Langue:

english

Fichier:

PDF, 166 KB

english, 2001

33

Epidemiology: Sexual transmission of HIV in Africa

Walker, Polly R., Worobey, Michael, Rambaut, Andrew, Holmes, Edward C., Pybus, Oliver G.

Journal:

Année:

2003

Langue:

english

Fichier:

PDF, 81 KB

english, 2003

34

Molecular Epidemiology: HIV-1 and HCV sequences from Libyan outbreak

de Oliveira, Tulio, Pybus, Oliver G., Rambaut, Andrew, Salemi, Marco, Cassol, Sharon, Ciccozzi, Massimo, Rezza, Giovanni, Gattinara, Guido Castelli, D'Arrigo, Roberta, Amicosante, Massimo

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 175 KB

english, 2006

35

Long-term evolution and transmission dynamics of swine influenza A virus

Vijaykrishna, Dhanasekaran, Smith, Gavin J. D., Pybus, Oliver G., Zhu, Huachen, Bhatt, Samir, Poon, Leo L. M., Riley, Steven, Bahl, Justin, Ma, Siu K., Cheung, Chung L.

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 581 KB

english, 2011

36

Investigating the endemic transmission of the hepatitis C virus

Oliver G. Pybus, Peter V. Markov, Anna Wu, Andrew J. Tatem

Journal:

International Journal for Parasitology

Année:

2007

Langue:

english

Fichier:

PDF, 1.41 MB

english, 2007

37

Estimating the date of origin of an HIV-1 circulating recombinant form

Kok Keng Tee, Oliver G. Pybus, Joe Parker, Kee Peng Ng, Adeeba Kamarulzaman, Yutaka Takebe

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 560 KB

english, 2009

38

Phylodynamic analysis of the dissemination of HIV-1 CRF01_AE in Vietnam

Huanan Liao, Kok Keng Tee, Saiki Hase, Rie Uenishi, Xiao-Jie Li, Shigeru Kusagawa, Pham Hong Thang, Nguyen Tran Hien, Oliver G. Pybus, Yutaka Takebe

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 786 KB

english, 2009

39

Explosive HIV-1 subtype B' epidemics in Asia driven by geographic and risk group founder events

Yue Li, Rie Uenishi, Saiki Hase, Huanan Liao, Xiao-Jie Li, Takayo Tsuchiura, Kok Keng Tee, Oliver G. Pybus, Yutaka Takebe

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 996 KB

english, 2010

40

Corrigendum to “Explosive HIV-1 subtype B' epidemics in Asia driven by geographic and risk group founder events” [Virology 402 (2010) 223–227]

Yue Li, Rie Uenishi, Saiki Hase, Huanan Liao, Xiao-Jie Li, Takayo Tsuchiura, Kok Keng Tee, Oliver G. Pybus, Yutaka Takebe

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 424 KB

english, 2010

41

Phylodynamics of H5N1 avian influenza virus in Indonesia

TOMMY TSAN-YUK LAM, CHUNG-CHAU HON, PHILIPPE LEMEY, OLIVER G. PYBUS, MANG SHI, HEIN MIN TUN, JUN LI, JINGWEI JIANG, EDWARD C. HOLMES, FREDERICK CHI-CHING LEUNG

Journal:

Molecular Ecology

Année:

2012

Langue:

english

Fichier:

PDF, 1.40 MB

english, 2012

42

New findings regarding the epidemic history and population dynamics of Japan-indigenous genotype 3 hepatitis E virus inferred by molecular evolution

Tatsunori Nakano, Kazuaki Takahashi, Oliver G. Pybus, Naoaki Hashimoto, Hideaki Kato, Hiroshi Okano, Makoto Kobayashi, Naoki Fujita, Katsuya Shiraki, Yoshiyuki Takei, Minoru Ayada, Masahiro Arai, Hiro

Journal:

Liver International

Année:

2012

Langue:

english

Fichier:

PDF, 1005 KB

english, 2012

43

The evolutionary dynamics of endogenous retroviruses

Aris Katzourakis, Andrew Rambaut, Oliver G. Pybus

Journal:

Trends in Microbiology

Année:

2005

Langue:

english

Fichier:

PDF, 135 KB

english, 2005

44

Pacing a small cage: mutation and RNA viruses

Robert Belshaw, Andy Gardner, Andrew Rambaut, Oliver G. Pybus

Journal:

Trends in Ecology & Evolution

Année:

2008

Langue:

english

Fichier:

PDF, 287 KB

english, 2008

45

Reconstructing the epidemic history of HIV-1 circulating recombinant forms CRF07_BC and CRF08_BC in East Asia: The relevance of genetic diversity and phylodynamics for vaccine strategies

Yutaka Takebe, Huanan Liao, Saiki Hase, Rie Uenishi, Yue Li, Xiao-Jie Li, Xiaoxu Han, Hong Shang, Adeeba Kamarulzaman, Naoki Yamamoto, Oliver G. Pybus, Kok Keng Tee

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 1.13 MB

english, 2010

46

Measurably evolving populations

Alexei J. Drummond, Oliver G. Pybus, Andrew Rambaut, Roald Forsberg, Allen G. Rodrigo

Journal:

Trends in Ecology & Evolution

Année:

2003

Langue:

english

Fichier:

PDF, 847 KB

english, 2003

47

Measuring the temporal structure in serially sampled phylogenies

Rebecca R. Gray, Oliver G. Pybus, Marco Salemi

Journal:

Methods in Ecology and Evolution

Année:

2011

Langue:

english

Fichier:

PDF, 447 KB

english, 2011

48

Viral mutation and substitution: units and levels

Robert Belshaw, Rafael Sanjuán, Oliver G Pybus

Journal:

Current Opinion in Virology

Année:

2011

Langue:

english

Fichier:

PDF, 517 KB

english, 2011

49

Evidence of a Large, International Network of HCV Transmission in HIV-Positive Men Who Have Sex With Men

Thijis van de Laar, Oliver Pybus, Sylvia Bruisten, David Brown, Mark Nelson, Sanjay Bhagani, Martin Vogel, Alex Baumgarten, Marie-Laure Chaix, Martin Fisher, Hannelore Gőtz, Gail V. Matthews, Stefan N

Journal:

Gastroenterology

Année:

2009

Langue:

english

Fichier:

PDF, 484 KB

english, 2009

50

Tracing the HIV-1 subtype B mobility in Europe: a phylogeographic approach

Dimitrios Paraskevis, Oliver Pybus, Gkikas Magiorkinis, Angelos Hatzakis, Annemarie MJ Wensing, David A van de Vijver, Jan Albert, Guiseppe Angarano, Birgitta Åsjö, Claudia Balotta, Enzo Boeri, Ricard

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 1.23 MB

english, 2009